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Data from: Registration of conventional soybean germplasm JTN-5110 with resistance to nematodes and fungal pathogens

dataset
posted on 2024-02-20, 21:48 authored by Lisa FritzLisa Fritz, Prakash R. Arelli, Alemu Mengistu

This dataset was generated from soybean (Glycine max) field trials conducted at the West Tennessee Research and Education Center in Jackson, TN and at the Research and Education Center at Milan in Milan, TN as well as from molecular marker screening conducted at the West Tennessee Research and Education Center in Jackson, TN.

Table 3 includes measured data for height, yield, and seed size, and rating data for lodging and seed quality for JTN-5110, 5601T, and select other released germplasm lines and cultivars tested in replicated breeder yield trials in Jackson and Milan, TN from 2010-2016, excluding 2014. This data may be useful in measuring yield gain in future releases of soybean germplasm or cultivars with broad resistance to soybean cyst nematode (SCN; Heterodera glycines). This data should not be used to measure yield gain for elite high-yielding cultivars that do not have broad cyst nematode resistance.

Table 5 includes rating data for JTN-5110 and soybeans with established SCN resistance from simple sequence repeat (SSR) markers: Satt309 and Sat_168, associated with rhg1 on chromosome 18; Sat_162, associated with Rhg4 on chromosome 8; and Satt574, associated with cqSCN-005 on chromosome 17. This data may be useful in understanding the role of these molecular regions in SCN resistance for JTN-5110 and parent line Anand. This data should not be used to draw broad conclusions about cyst nematode resistance, in general.

Table 7 includes rating data for JTN-5110 and check cultivars from frogeye leafspot (caused by Cercospora sojina) field disease screenings conducted in Milan, TN from 2010-2012. This data may be useful in measuring changes in frogeye leafspot incidence and severity in West Tennessee. This data should not be used to draw broad conclusions or represent different geographic areas.


Resources in this dataset:

  • Resource Title: Data dictionary.

    File Name: data dictionary.csv

    Resource Description: A data dictionary defining the fields in Tables 3, 5, and 7

    Resource Software Recommended: Microsoft Excel,url: https://www.microsoft.com/en-us/microsoft-365/excel


  • Resource Title: Table 3 - JTN-5110 compared to 5601T.

    File Name: Table 3 - JTN-5110 compared to 5601T.csv

    Resource Description: Breeder yield trial data from Jackson and Milan, TN from 2010-2016, excluding 2014

    Resource Software Recommended: Microsoft Excel,url: https://www.microsoft.com/en-us/microsoft-365/excel


  • Resource Title: Table 5 - compiled marker data.

    File Name: Table 5 - compiled marker data.csv

    Resource Description: Genetic marker data for SSR markers associated with soybean cyst nematode resistance. Screening conducted in Jackson, TN from 2005-2020.

    Resource Software Recommended: Microsoft Excel,url: https://www.microsoft.com/en-us/microsoft-365/excel


  • Resource Title: Table 7 - frogeye leafspot evaluation.

    File Name: Table 7 - frogeye leafspot evaluation.csv

    Resource Description: Data from frogeye leafspot field screening conducted in Milan, TN from 2010-2012.

    Resource Software Recommended: Microsoft Excel,url: https://www.microsoft.com/en-us/microsoft-365/excel

Funding

USDA-ARS: 6066-21220-011-00D

History

Data contact name

Fritz, Lisa

Data contact email

lisa.fritz@usda.gov

Publisher

Ag Data Commons

Intended use

This dataset is intended to be used for reference and comparison purposes in the development of soybean germplasm adapted to West Tennessee or the Mid-South, United States.

Use limitations

This data is limited in scope, as it applies primarily to one maturity group V soybean with soybean cyst nematode resistance, JTN-5110.

Temporal Extent Start Date

2005-01-01

Temporal Extent End Date

2020-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-88.84509,35.623041]},"type":"Feature","properties":{}},{"geometry":{"type":"Point","coordinates":[-88.713426,35.934688]},"type":"Feature","properties":{}}]}

Geographic location - description

Tennessee, United States

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

soybeans; germplasm; pathogens; Glycine max; field experimentation; genetic markers; seed size; seed quality; Heterodera glycines; high-yielding varieties; cyst nematodes; chromosomes; Cercospora sojina; plant disease resistance; plant pathogenic fungi

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 303

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Fritz, Lisa A.; Arelli, Prakash R.; Mengistu, Alemu (2023). Data from: Registration of conventional soybean germplasm JTN-5110 with resistance to nematodes and fungal pathogens. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1528497