Data from: Plasmopara echinaceae, a new species of downy mildew affecting cone flowers (Echinacea purpurea) in the United States
A new species of downy mildew (Oomycota, Peronosporales) is reported. This dataset contains alignments of DNA sequences (cox2 and LSU) markers, alignment of cox2 marker to be used in species identification and resulting phylogenetic trees.
Resources in this dataset:
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Resource Title: Alignment Cox2 dataset File Name: Cox2_EchDM_final_alignment.fasta Resource Description: Alignment of Cox2 DNA sequences.
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Resource Title: Alignment LSU dataset File Name: LSU_EchDM_final_alignment.fasta Resource Description: Alignment of LSU DNA sequences.
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Resource Title: Alignment Cox2 dataset Barcoding File Name: Cox2_EchDM_Genetic_differences_alignment.fasta Resource Description: Alignment of cox2 marker to be used in species identification and resulting phylogenetic trees.
Funding
USDA-ARS: 8042-22000-298-00-D
History
Data contact name
Salgado-Salazar, CatalinaData contact email
catalina.salgado@usda.govPublisher
Ag Data CommonsIntended use
This dataset will allow the repeatability of methods used to identify this new species of downy mildew. Alignments can be downloaded and new sequences can be added to perform phylogenetic analyses. An additional cox2 alignment is provided to help in the identification of this species based on species-specific single nucleotide polymorphisms.Use limitations
Users have to consult the publication to obtain more important information, such as accession numbers at other data repositories.Temporal Extent Start Date
2022-08-22Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-89.329284676351,43.218237471232]},"type":"Feature","properties":{}}]}Geographic location - description
New species of downy mildew was originally collected in Jefferson County, WIISO Topic Category
- biota
Ag Data Commons Group
- AgBioData
National Agricultural Library Thesaurus terms
Plasmopara; new species; downy mildew; flowers; Echinacea purpurea; data collection; nucleotide sequences; ribosomal DNA; species identification; phylogeny; pathogens; single nucleotide polymorphism; Wisconsin; United StatesOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 303
Pending citation
- No
Public Access Level
- Public
