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Data from: Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States

dataset
posted on 2024-02-08, 22:43 authored by Sandeep Sharma, Alex Z. Zaccaron, John B. Ridenour, Tom W. Allen, Kassie N. Conner, Vinson P. Doyle, Trey Price, Edward J. Sikora, Raghuwinder Singh, Terry N. Spurlock, Maria Tomaso-Peterson, Tessie Wilkerson, Burton H. Bluhm

The draft genome of Xylaria sp. isolate MSU_SB201401, causal agent of taproot decline of soybean in the southern U.S., is presented here. The genome assembly was 56.7 Mb in size with an L50 of 246. A total of 10,880 putative protein-encoding genes were predicted, including 647 genes encoding carbohydrate-active enzymes and 1053 genes encoding secreted proteins. This is the first draft genome of a plant-pathogenic Xylaria sp. associated with soybean. The draft genome of Xylaria sp. isolate MSU_SB201401 will provide an important resource for future experiments to determine the molecular basis of pathogenesis. The whole genome shotgun project of Xylaria sp. isolate MSU_SB201401 has been deposited at DDBJ/ENA/GenBank under the accession number NPFG00000000; the version described in this paper is version NPFG01000000.


Resources in this dataset:

  • Resource Title: Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States.

    File Name: Web Page, url: https://www.sciencedirect.com/science/article/pii/S2352340917307552

    Data in Brief presenting draft genome assembly and gene annotation of Xylaria sp. isolate MSU_SB201401, causal agent of taproot decline of soybean in the southern U.S.

Funding

USDA-NIFA: Hatch project 1008895

USDA-NIFA: Hatch project LAB94338

History

Data contact name

Bluhm, Burton H.

Data contact email

bbluhm@uark.edu

Publisher

Data in Brief

Intended use

This draft genome will accelerate functional genomics research and help to understand the molecular basis of pathogenicity.

Theme

  • Not specified

Geographic Coverage

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Geographic location - description

Southeastern United States; Louisiana

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

Xylaria; soybeans; genome assembly; genes; enzymes; protein secretion; pathogenesis; nucleotide sequences; Southeastern United States; plant pathogens; plant pathogenic fungi; root diseases; root rot; mycology; plant pathology; Louisiana; Biological Sciences

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Sharma, S., Zaccaron, A. Z., Ridenour, J. B., Allen, T. W., Conner, K., Doyle, V. P., Price, T., Sikora, E., Singh, R., Spurlock, T., Tomaso-Peterson, M., Wilkerson, T., & Bluhm, B. H. (2018). Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States. Data in Brief, 17:129-133. https://doi.org/10.1016/j.dib.2017.12.060

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