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Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of 18S rRNA gene with a focus on Chlorophyta

dataset
posted on 2017-09-01, 14:18 authored by M TraginM Tragin, Adriana Zingone, Daniel VaulotDaniel Vaulot
Supplementary data 1. Mothur script for sequence analysis
Supp. data 2. Fasta file of Chlorophyta OTUs for V4
Supp. data 3. Fasta file of Chlorophyta OTUs for V9
Supp. data 4. Chlorophyta OTUs for V4 with assignation and read abundance at the different stations (Excel file).
Supp. data 5. Chlorophyta OTUs for V9 with assignation and read abundance at the different stations (Excel file).
Supp. data 6. Top 10 BLAST hits against Genbank nr database for Chlorophyta V4 OTUs. Red lines correspond to OTUs badly assigned to non Chlorophyta and green corresponds to OTUs badly assigned to another Chlorophyta representative.
Supp. data 7. Top 10 BLAST hits against Genbank nr database for Chlorophyta V9 OTUs. Red lines correspond to OTUs badly assigned to non Chlorophyta and green lines corresponds to OTUs badly assigned to another Chlorophyta representative.

Funding

European project Ocean Sampling Day (MicroB3, UE-contract-287589), Université Pierre et Marie Curie and Région Bretagne

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