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ORAL_HMW_METHOD_04_REPL_01.db.gz (15.14 MB)
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ORAL_HMW_METHOD_04_REPL_01.fasta.gz (8.17 MB)
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ORAL_HMW_METHOD_04_REPL_02.db.gz (18.95 MB)
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ORAL_HMW_METHOD_04_REPL_02.fasta.gz (10.21 MB)
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ORAL_HMW_METHOD_05_REPL_01.db.gz (5.65 MB)
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ORAL_HMW_METHOD_05_REPL_01.fasta.gz (3.11 MB)
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ORAL_HMW_METHOD_05_REPL_02.db.gz (6.33 MB)
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ORAL_HMW_METHOD_05_REPL_02.fasta.gz (3.48 MB)
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ORAL_HMW_METHOD_06_REPL_01.db.gz (9.6 MB)
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ORAL_HMW_METHOD_06_REPL_01.fasta.gz (5.13 MB)
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ORAL_HMW_METHOD_06_REPL_02.db.gz (21.42 MB)
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ORAL_HMW_METHOD_06_REPL_02.fasta.gz (11.41 MB)
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Assembled minION long-reads
Version 2 2021-10-28, 13:33
Version 1 2021-03-02, 18:39
dataset
posted on 2021-10-28, 13:33 authored by A. Murat ErenA. Murat Eren, Florian Trigodet, Karen LolansAssembled and polished minION long-reads from human oral cavity samples processed using three HMW DNA extraction methods (M4, M5, and M6, each with two replicates) described in the following study:
https://doi.org/10.1101/2021.03.03.433801
The data pack also includes anvi'o contigs databases generated from the FASTA files of assembled long reads which includes gene calls, HMM hits for single-copy core genes, and gene functions. Visit this page to learn what you can do with a contigs database:
https://merenlab.org/m/contigs-db
https://merenlab.org/m/contigs-db
PS: we also have a set of contigs databases for unassembled long-reads and assembled short-read sequences from samples collected from the same individual in a different data pack. For their DOIs, please see the Data Availability section in our study.
