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Appendix 4.3.4: MEME selected site analysis

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posted on 2018-08-13, 17:31 authored by Timothy FallonTimothy Fallon
After identification of the selected branch via the aBSREL method, we turned to the MEME method within the HyPhy program (v2.3.11)[235], to identify those sites which may have adaptively evolved. We tested the branch leading to EAncLuc, which was identified as under selection in the aBSREL analysis. A single partition was recovered with 25 sites under episodic diversifying positive selection at p <= 0.1.

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