Appendix 4.3.4: MEME selected site analysis
2018-08-13T17:31:14Z (GMT) by
After identification of the selected branch via the aBSREL method, we turned to the MEME method within the HyPhy program (v2.3.11), to identify those sites which may have adaptively evolved. We tested the branch leading to EAncLuc, which was identified as under selection in the aBSREL analysis. A single partition was recovered with 25 sites under episodic diversifying positive selection at p <= 0.1.