Antimicrobial resistance surveillance report, Patan Hospital, Nepal, 01 Jan 2018 to 30 Dec 2018
Updated on 18th January 2021
This update fixes inaccurate estimations of the proportion of non-susceptible isolates of E. coli and K. pneumoniae for ampicillin (page 9-10 in the AMR surveillance report) in AMASS 1.0. The updated AMR surveillance report and output files were generated by AMASS 1.1 using the same data sets and data dictionary files. AMASS 1.1 (figshare link https://figshare.com/articles/dataset/AMASS_zip/7763330) fixes a typo in the R code (z_Rcode.R file) of the AMASS 1.0 that caused the inaccurate estimations.
This is a repository of the files for Patan Hospital. The attached three files are:
1) The AMR surveillance report automatically generated from AMASS using hospital admission and microbiology data of Patan Hospital in Nepal
2) Aggregated summary data in .csv format automatically generated from AMASS
3) Data dictionary for microbiology data file of Patan Hospital (configured by the hospital to be used with the AMASS application)
Please note that the two data dictionary files can be re-used with the data files of the hospital in the future in cases when variables names and values in the raw data remained unchanged.
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