Ortaetal_2021_60_rat_genomes_coverage_data.zip (76.1 kB)
Alberto Orta etal. Rats exhibit age-related mosaic loss of chromosome Y
Version 2 2021-11-26, 19:49
Version 1 2021-11-11, 19:43
dataset
posted on 2021-11-26, 19:49 authored by Diego CortezDiego CortezCoverage data from 60 re-sequenced rat genomes from the following work: Rats exhibit age-related mosaic loss of chromosome Y. Work by Alberto Orta, Diego Cortez and colleagues. The dataset contains two types of data for each of the 60 genomes: one with the normalized coverage (median values of 10,000 nucleotides long; normalized by sequencing depth) and a file containing the log2 ratios of old/young coverage data (median values of 10,000 nucleotides long). To avoid an error that comes from calculating log2 ratios of negative values, we recommend to add the value of 4 (minimum value in the dataset) to the normalized coverage data before performing the log2 ratios of old versus young normalized coverage values.