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Ortaetal_2021_60_rat_genomes_coverage_data.zip (76.1 kB)

Alberto Orta etal. Rats exhibit age-related mosaic loss of chromosome Y

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Version 2 2021-11-26, 19:49
Version 1 2021-11-11, 19:43
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posted on 2021-11-26, 19:49 authored by Diego CortezDiego Cortez
Coverage data from 60 re-sequenced rat genomes from the following work: Rats exhibit age-related mosaic loss of chromosome Y. Work by Alberto Orta, Diego Cortez and colleagues. The dataset contains two types of data for each of the 60 genomes: one with the normalized coverage (median values of 10,000 nucleotides long; normalized by sequencing depth) and a file containing the log2 ratios of old/young coverage data (median values of 10,000 nucleotides long). To avoid an error that comes from calculating log2 ratios of negative values, we recommend to add the value of 4 (minimum value in the dataset) to the normalized coverage data before performing the log2 ratios of old versus young normalized coverage values.

Funding

CONACYT Fronteras en la Ciencia grant (no. FC-2016/1682)

CONACYT Ciencia de Frontera grant (no. 682142)

Royal Society Newton Advanced Fellowship (no. NA160564)

NERC grant (no. NE/P004121/1)

PAPIIT-DGAPA-UNAM grant (no. IA204020)

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