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AGNOSTOS test dataset

Version 6 2021-10-28, 12:31
Version 5 2020-11-12, 15:04
Version 4 2020-10-06, 07:38
Version 3 2020-07-14, 10:31
Version 2 2020-07-09, 15:57
Version 1 2020-07-09, 14:31
dataset
posted on 2021-10-28, 12:31 authored by Chiara VanniChiara Vanni
Test dataset for the agnostos-wf (https://github.com/functional-dark-side/agnostos-wf).

The test dataset consists of 3 TARA Ocean surface samples from the Indian Ocean (IO), all within a size fraction of 0.1-0.22 micro-m (giant viruses, archaea and bacteria enriched fraction). For each sample we randomly selected 5K contigs.

10K contigs from two samples are used to test the DB-creation module:
TARA_041_SRF_0.1-0.22 (originally 90,135 contigs)
TARA_039_SRF_0.1-0.22 (originally 118,883 contigs)

And 5K contigs from one sample are used to test the DB-update module:
TARA_038_SRF_0.1-0.22 (originally 157,925 contigs)

Contextual data for the chosen samples can be found in the file: TARA_IO_samples_contextual_data.tsv.gz

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