12711_2021_676_MOESM5_ESM.xlsx (184.2 kB)
Additional file 5 of Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses
dataset
posted on 2021-12-08, 04:30 authored by Leticia P. Sanglard, Yijian Huang, Kent A. Gray, Daniel C. L. Linhares, Jack C. M. Dekkers, Megan C. Niederwerder, Rohan L. Fernando, Nick V. L. SerãoAdditional file 5: Table S4. Association of haplotypes with S/P ratio (approach 2). The columns represent: (1) haplotype numbered by order of appearance in the genome; (2) chromosome where the haplotype is located; (3) P-value for the association analyses; and (4) q-values for the association analyses (P-values corrected for multiple testing using false discovery rate method).
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Smithfield Premium Genetics Iowa Pork Producers Association Iowa State University Graduate College
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value ≥ 0value ≤ 0using antibody responsetotal antibody responsestronger linkage disequilibriummajor histocompatibility complexcrossbred commercial giltscommercial pig populationsvaccinated crossbred sowsregions harbor immunemultiple reproductive traitsgenetic variance explainedquantitative trait lociprrsv vaccination measuredleast one qtlconclusions specific rohmhc region mayhaplotype significantly associatedchromosome 7 regionwide association studycommercial sowsprrsv vaccinationsignificantly associatedwide haplotypespecific rohreproductive performancegenetic indicatorchromosome 7also associatedmhc regionrohet regionsrelated geneslitter sizelarger estimategenomic selectiongenomic characterizationgenomic basischromosomes 1causal genesassisted selection
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