12711_2021_676_MOESM1_ESM.xlsx (31.9 MB)
Additional file 1 of Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses
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posted on 2021-12-08, 04:30 authored by Leticia P. Sanglard, Yijian Huang, Kent A. Gray, Daniel C. L. Linhares, Jack C. M. Dekkers, Megan C. Niederwerder, Rohan L. Fernando, Nick V. L. SerãoAdditional file 1: Table S1. ROH and ROHet identified in the study. Spreadsheets 1 and 2 contain results for ROH and ROHet, respectively. The columns represent: (1) ROH/ROHet numbered according to the number of SNPs within each ROH/ROHet; (2) identification of the individual; (3) chromosome where the ROH/ROHet is located; (4) SNP where the ROH/ROHet starts; (4) SNP where the ROH/ROHet ends; (5) position in kb where the ROH/ROHet starts; (6) position in kb where the ROH/ROHet ends; (7) size of the ROH/ROHet; and (8) number of SNPs within a ROH/ROHet for a given individual.
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Smithfield Premium Genetics Iowa Pork Producers Association Iowa State University Graduate College
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value ≥ 0value ≤ 0using antibody responsetotal antibody responsestronger linkage disequilibriummajor histocompatibility complexcrossbred commercial giltscommercial pig populationsvaccinated crossbred sowsregions harbor immunemultiple reproductive traitsgenetic variance explainedquantitative trait lociprrsv vaccination measuredleast one qtlconclusions specific rohmhc region mayhaplotype significantly associatedchromosome 7 regionwide association studycommercial sowsprrsv vaccinationsignificantly associatedwide haplotypespecific rohreproductive performancegenetic indicatorchromosome 7also associatedmhc regionrohet regionsrelated geneslitter sizelarger estimategenomic selectiongenomic characterizationgenomic basischromosomes 1causal genesassisted selection
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