Table 1.xls (9.5 kB)
A list of the tools presented and selected, additional work that benefited from them.
dataset
posted on 2023-11-07, 18:22 authored by Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. OuzounisColumns—GitHub: name of GitHub repository where the tools and documentation are available (NA: not applicable, as case study)–the prefix of the GitHub folders implies a typical workflow (outlined in Fig 2); tool: tool name (or in case of studies, a codeword); year: year of original publication; PMID: PubMed identifier; citations: number of citations reported by Google Scholar on 28-Mar-2023; citations/yr: number of citations per year since original publication; short description: self-explanatory, for further details, please see original publications. Table is sorted on PMID (which reflects the time of publication).
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protein family discoverymade available onlineillustrate basic useappropriate documentation filesbioinformatics software resourcestoolkit may alsoestablished software componentslegacy version 1div >< p>, support scriptssoftware componentscgg toolkitwidely usedterm permanencesequence matchingregistered toolsproven methodspictorial representationsparticularly criticalopen sourcemethodological reproducibilitymagicmatch life scienceskey requirementgithub genome scalegenerage genecast functional characterizationensures longdiffuse development acrosscomputational genomicscogent >, supported
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