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Test of species richness estimators at different values of curvature parameter (Cp) using TCR data.

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posted on 2014-06-19, 03:55 authored by Daniel J. Laydon, Anat Melamed, Aaron Sim, Nicolas A. Gillet, Kathleen Sim, Sam Darko, J. Simon Kroll, Daniel C. Douek, David A. Price, Charles R. M. Bangham, Becca Asquith

The curvature parameter Cp is plotted against the relative error (|Sobs - Ŝobs| /Sobs) of each estimator. Four patient data sets are shown: A total CD4+ from patient C; B total CD4+ from patient E; C total CD8+ from patient C; D total CD8+ from patient E. Each point represents an estimate from a subsample of data. Note the plots have different y-axis scales and the y-axes in C and D are segmented. Broadly, the accuracy of all estimators improves as Cp increases, and this increase is more pronounced for DivE. From Cp>0.1, DivE generally outperforms the existing estimators, but is prone to error at very low values of Cp., when the rarefaction curve implies a near-constant rate of species accumulation.

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