Table_1.xls (5.5 kB)
Ploidy estimation for an artificially combined wheat dataset.
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posted on 2015-04-16, 04:04 authored by Gabriel R. A. Margarido, David HeckermanReads from the large arms of chromosomes 5A, 5B and 5D were pooled, assembled and used for ploidy estimation. Only contigs with average coverage of 10X or above, and for which the individual ploidy in a given subgenome was estimated to be one were considered.
aBased on BLAST alignments to the individual assemblies.
Ploidy estimation for an artificially combined wheat dataset.
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sequencing coveragehomoeologous genomic regionsshow applicabilitymethodreport findingspolyploid plant genomesContig Ploidywgsallele proportionsgenome shotgunGenome Assembly Ploidy Estimationgenome assembly algorithmsquality draft genome sequencesConPADEallele dosage estimationpolyploid individualssequencing datahaplotypes influence phenotype
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