Table_3.xls (9.5 kB)
Likelihood ratio tests (PAML) in Anopheles immunity genes between models that allow positive selection (M3, M2a, M8) and those that do not (M0, M1a, M7) and identification of sites exhibiting dN/dS ratio >1.
dataset
posted on 2010-01-26, 01:56 authored by Aristeidis Parmakelis, Marina Moustaka, Nikolaos Poulakakis, Christos Louis, Michel A. Slotman, Jonathon C. Marshall, Parfait H. Awono-Ambene, Christophe Antonio-Nkondjio, Frederic Simard, Adalgisa Caccone, Jeffrey R. Powell*
Significant p-value at 0.05 significance level; df: degrees of freedom.
aThis quantity is compared to the critical values of a chi-square distribution with the respective degrees of freedom.
bProbability>0.95 in the Naive Empirical Bayes (NEB) analyses of PAML. Even though positive selection based on indications of the NEB analysis is questionable, we are reporting the results for within-gene comparative purposes.
cProbability>0.99 in the Bayes Empirical Bayes (BEB) analyses of PAML.
dSites refer to amino acid positions of the proteins.
eLetters in parentheses refer to the amino acid present at the site.
Sites in bold characters indicate those that were identified by HyPhy as well.
