File S1 - Evidence of Carbon Fixation Pathway in a Bacterium from Candidate Phylum SBR1093 Revealed with Genomic Analysis

Supporting Figures and Tables. Figure S1. Phylogenetic tree of sequences of SBR1093 and the reference sequences from representative phyla. This phylogenetic tree is constructed with 16S rRNA gene sequences based on the maximum-likelihood method with Jukes and Cantor distances. Only bootstrap value of >50% is labeled and the phylotypes of SRB1093 are marked with red in bold. The scale bar represents 0.1 nucleotide substitutions per site. Figure S2. Taxonomy of proteins in this SBR1093 HKSP. Proteins are converted with the predicted gene, and performed BLASTp against NCBI nr database (released at July 18, 2013). Therefore, it is imported into Megan for taxonomic classification. Figure S3. Putative nitrogen metabolic pathway of this SBR1093 HKSP (Adapted from KEGG). Figure S4. Suspected carbon fixation pathway possessed by this SBR1093 HKSP (Adapted from KEGG). Columns with solid fill indicate these enzymes are identified in this draft genome, which are connected with colorful lines and arrows and each color represents a type of carbon fixation pathway. Only the red one are full filled, which represents the HPHB cycle. Table S1. Universally occurring clusters of orthologous groups and tRNAs for amino acids identified in this draft genome. Table S2. List of ESCGs identified in this draft genome and their taxonomy. Table S3. Suspected genes in this draft genome that involving in the primary metabolism. Table S4. Suspected genes in this draft genome that involving in the antibiotics and heavy metal resistance or export.

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