figshare
Browse
Figure_3.tif (1.9 MB)

Effect of oxygen concentration on the functional genomic content of microbial communities represented in the 24 datasets.

Download (0 kB)
figure
posted on 2014-06-12, 03:34 authored by Ari J. S. Ferreira, Rania Siam, João C. Setubal, Ahmed Moustafa, Ahmed Sayed, Felipe S. Chambergo, Adam S. Dawe, Mohamed A. Ghazy, Hazem Sharaf, Amged Ouf, Intikhab Alam, Alyaa M. Abdel-Haleem, Heikki Lehvaslaiho, Eman Ramadan, André Antunes, Ulrich Stingl, John A. C. Archer, Boris R. Jankovic, Mitchell Sogin, Vladimir B. Bajic, Hamza El-Dorry

(A) Hierarchical clustering of COGs that significantly influenced by extreme oxygen limitation. Datasets analysis are based on the abundance profile of 18 COGs which significantly differed in abundance levels between an extremely hypoxic environment (Iquique 85-, 110 and 200 m deep, permanent OMZ) and environments with higher D.O. (Fisher's exact test, FDR-corrected, p≤0.05). Bootstrap confidence values for the nodes are shown. Heatmap coloring reflects the Z score of normalized abundances of each COG across all clustered datasets. Roman numbers on the left side of the figure present different groups of COGs as determined by abundance profile across the clustered datasets. (B) Mean abundances of the COGs in group I (figure 3A) as a function of the oxygen concentration. Inset shows the gradual increase in the abundance of these genes in datasets from Marmara 1000 m, Iquique 85 m, Iquique 110 m, and Iquique 200 m, as oxygen concentration drops from 30 µmol.kg−1 to 3.2 µmol.kg−1.

History

Usage metrics

    PLOS ONE

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC