Fig_4.tif (148.99 kB)
Bayesian skyride plot.
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posted on 2015-09-02, 03:27 authored by Erika Ebranati, Elena Pariani, Antonio Piralla, Monica Gozalo-Margüello, Carla Veo, Laura Bubba, Antonella Amendola, Massimo Ciccozzi, Massimo Galli, Alessandro Remo Zanetti, Fausto Baldanti, Gianguglielmo ZehenderOrdinate: the number of effective infections at time t (Ne(t)); abscissa: time before present in calendar month. Time = 0 (present) corresponds to the sampling month of the most recent isolates (March 2012). The thick solid line represents the median value, and the grey area the 95% HPD of the Ne(t) estimates. The vertical line indicates the 95% lower HPD tMRCA estimate of the tree root.
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antigenic sitesItalian cladestree rootPhylogenetic analysesselection pressuremutation ratemigrationtMRCA estimatesItalian strainsdomain causesevolution.MethodsPhylodinamic analysessweeps drivepoint mutationsPopulation Dynamics2012 BackgroundInfluenzaDecember 2003.Italian populationHA coding sequenceevolutionary dynamicsepidemic seasonsBayesian methodvirus
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