WEoN_FlyT_MAC.zip (53.56 MB)
WEoN FlyT for mac
Version 5 2020-05-22, 21:30
Version 4 2020-03-27, 18:41
Version 3 2020-03-25, 01:38
Version 2 2020-03-25, 01:34
Version 1 2020-03-09, 19:25
software
posted on 2020-05-22, 21:30 authored by sebastian contreras-riquelmesebastian contreras-riquelmeWeighted Epigenomic Network: Fly Tool (WEoN FlyT) is a Cytoscape
app that incorporates a filtering method to determine context-specific
gene regulatory networks. The method employs diverse data to filter out
regulatory connections between genes. WEoN uses histone modifications
through Chromatin Inmunoprecipitation followed by DNA sequencing
(ChIP-seq), gene expression through RNA-seq, and chromatin accesibility
through DNase-seq data. A serie of heuristic filters removes known and
inferred regulations (like Transcription factors and regulatory RNAs)
from a Gene Regulatory Network (GRN) considered as a Reference Network
(e.g. a GRN with all known connections, regardless development stage or
cell type). The corresponding context-specific GRN considers weighted
information, and the generated network can be further analyzed within
the Cytoscape software.