Transcriptome - Sphaerothecum destruens (rosette agent)

2017-09-27T09:51:56Z (GMT) by Multicellgenome Lab Guifré Torruella
Reads are deposited in NCBI: https://www.ncbi.nlm.nih.gov/sra/SRX737879

Assembly in-home BGI to obtain Unigene (contigs)
- ORF prediction using TransDecoder (Trinity plugin) and PfamScan to obtain coding sequences (CDS files) from transcripts (mRNA)
- Protein translations are included (pep)

- clean.fasta: Assembly cleaned from cross-contamination of other species multiplexed (Corallochytrium limacisporum India, Ichthyophonus hoferi and Nutomonas longa) after applying CroCo V0.1.1 (Simion et al. in prep). It may contain bacterial contamination.

Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, Mark A. Chaplin, Javier del Campo, Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie, and Iñaki Ruiz-Trillo. (2015)
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.
Current Biology 25(18):2404-10.

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