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Supplementary data for: A revision of the New Zealand weevil genus Irenimus Pascoe, 1876 (Coleoptera: Curculionidae: Entiminae).
This fileset contains DNA alignments, analysis scripts and Euler/X input files associated with the taxonomic revision "A revision of the New Zealand weevil genus Irenimus Pascoe, 1876 (Coleoptera: Curculionidae: Entiminae)" (Brown SDJ (2017). Zootaxa 4263(1): 1-42. doi: 10.11646/zootaxa.4263.1.1)
DNA alignment files in FASTA format:
coi.fasta: 3' end of the cytochrome oxidase I mitochondrial gene (799 bp, 16 sequences)
coib.fasta: 5' end ("barcoding region") of the cytochrome oxidase I mitochondrial gene (669 bp, 7 sequences)
28s.fasta: D2-D3 region of 28S ribosomal RNA gene (756 bp, 17 sequences)
argk.fasta: arginine kinase nuclear gene (715 bp, 17 sequences)
cad.fasta: CAD nuclear gene (460 bp, 12 sequences)
Analysis scripts:
IrenimusMolecularDiagnostics.R: Script file containing R code for creating the figures in the "Molecular Diagnostics" section of the paper.
Spreadsheet:
IrenimusData.csv: comma separated table containing transcribed label data, georeferenced localities, and morphological data. Fields follow Darwin Core standards for geographic and label data. Morphological data fields are somewhat more idiosyncratic, but were intended to be self-explanatory.
Euler/X taxonomic alignment files:
Broun_Kuschel.txt: Euler/X input file stating the articulations between the concepts of Catoptes sec. Broun and Irenimus sec. Kuschel.
Broun_Kuschel.pdf: Visualisation of the taxonomic concept alignment resulting from the articulations given in Broun_Kuschel.txt. This is a PDF version of Figure 97 in the paper.
Broun_Kuschel.svg: Visualisation of the taxonomic concept alignment resulting from the articulations given in Broun_Kuschel.txt. This is a SVG version of Figure 97 in the paper.
Brown_Broun.txt: Euler/X input file stating the articulations between the concepts of Catoptes sec. Broun and Chalepistes sec. Brown.
Brown_Broun.pdf: Visualisation of the taxonomic concept alignment resulting from the articulations given in Brown_Broun.txt. This is a PDF version of Figure 98 in the paper.
Brown_Broun.svg: Visualisation of the taxonomic concept alignment resulting from the articulations given in Brown_Broun.txt. This is a SVG version of Figure 98 in the paper.
Kuschel_Brown.txt: Euler/X input file stating the articulations between the concepts of Irenimus sec. Kuschel and Chalepistes sec. Brown.
Kuschel_Brown.pdf: Visualisation of the taxonomic concept alignment resulting from the articulations given in Kuschel_Brown.txt. This is a PDF version of Figure 99 in the paper.
Kuschel_Brown.svg: Visualisation of the taxonomic concept alignment resulting from the articulations given in Kuschel_Brown.txt. This is a SVG version of Figure 99 in the paper.
DNA alignment files in FASTA format:
coi.fasta: 3' end of the cytochrome oxidase I mitochondrial gene (799 bp, 16 sequences)
coib.fasta: 5' end ("barcoding region") of the cytochrome oxidase I mitochondrial gene (669 bp, 7 sequences)
28s.fasta: D2-D3 region of 28S ribosomal RNA gene (756 bp, 17 sequences)
argk.fasta: arginine kinase nuclear gene (715 bp, 17 sequences)
cad.fasta: CAD nuclear gene (460 bp, 12 sequences)
Analysis scripts:
IrenimusMolecularDiagnostics.R: Script file containing R code for creating the figures in the "Molecular Diagnostics" section of the paper.
Spreadsheet:
IrenimusData.csv: comma separated table containing transcribed label data, georeferenced localities, and morphological data. Fields follow Darwin Core standards for geographic and label data. Morphological data fields are somewhat more idiosyncratic, but were intended to be self-explanatory.
Euler/X taxonomic alignment files:
Broun_Kuschel.txt: Euler/X input file stating the articulations between the concepts of Catoptes sec. Broun and Irenimus sec. Kuschel.
Broun_Kuschel.pdf: Visualisation of the taxonomic concept alignment resulting from the articulations given in Broun_Kuschel.txt. This is a PDF version of Figure 97 in the paper.
Broun_Kuschel.svg: Visualisation of the taxonomic concept alignment resulting from the articulations given in Broun_Kuschel.txt. This is a SVG version of Figure 97 in the paper.
Brown_Broun.txt: Euler/X input file stating the articulations between the concepts of Catoptes sec. Broun and Chalepistes sec. Brown.
Brown_Broun.pdf: Visualisation of the taxonomic concept alignment resulting from the articulations given in Brown_Broun.txt. This is a PDF version of Figure 98 in the paper.
Brown_Broun.svg: Visualisation of the taxonomic concept alignment resulting from the articulations given in Brown_Broun.txt. This is a SVG version of Figure 98 in the paper.
Kuschel_Brown.txt: Euler/X input file stating the articulations between the concepts of Irenimus sec. Kuschel and Chalepistes sec. Brown.
Kuschel_Brown.pdf: Visualisation of the taxonomic concept alignment resulting from the articulations given in Kuschel_Brown.txt. This is a PDF version of Figure 99 in the paper.
Kuschel_Brown.svg: Visualisation of the taxonomic concept alignment resulting from the articulations given in Kuschel_Brown.txt. This is a SVG version of Figure 99 in the paper.
