distanceCode.R (14.64 kB)View fileThis item contains files with download restrictions
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obsDataC.R (0.21 kB)View fileThis item contains files with download restrictions
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popSimCodeC_E.R (2.45 kB)View fileThis item contains files with download restrictions
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simCohortVec.so (12.72 kB)View fileThis item contains files with download restrictions
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SMCcode_E.R (5.76 kB)View fileThis item contains files with download restrictions
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Supplement 1. C++ code and R script files for summary statistics, distance metrics, population simulation, and sequential Monte Carlo algorithm used for parameter estimation of a stochastic stage-structured population model.
We provide functions to compute distances using all candidate summary statistics and distance metrics in distanceCode.R.
obsDataC.R is a data file that was used as our "observed" data set.
We simulated many data sets using popSimCodeC_E.R. This source file contains both an R function to simulate a data set and an interface to call C++ code simCohortVec.co to simulate a data set.
The actual ABC SMC algorithm is coded in a function in SMCcode_E.R.