Strain-specific annotation files for data in File S3 from Linheiro & Bergman 2012
Data in File S3 from Linheiro & Bergman 2012 are merged across all strains in the DGRP sample. This archive provides bed files with read support in the score field for individual strains. The strain-specific data here are based on the revised dataset from Linheiro & Bergman 2012 posted here: http://dx.doi.org/10.6084/m9.figshare.683836.
The union of these strain specific .bed files differs slightly from the merged .bed file corresponding to File S3 (http://dx.doi.org/10.6084/m9.figshare.683836) because of overlapping TE insertions sites. In the merging process, 11 TE insertion sites supported by a total of 37 reads were eliminated.