Single-cell RNA-seq data from Smart-seq2 sequencing of FACS sorted cells (v2)

<div>Gene-count tables for FACS sorted cells sequenced with Smart-Seq2 from 20 organs of 7 mice. Cells are grouped by tissue of origin.<br></div><div><br></div><div><div></div><div>Includes data for 53,760 cells, 44,879 of which passed a QC cutoff of at least 500 genes and 50,000 reads.</div></div><div><br></div><div><div>Cell annotations using the Cell Ontology [1] controlled vocabulary are in a separate csv.</div><div><br></div><div>This differs from v1 by renaming "Brain_Neurons" --> "Brain_Non-microglia" to be consistent with the manuscript.<br></div><div><br></div><div>Update 2018-09-20: Updated annotations to latest manuscript version</div><div><br></div><div>Update 2018-02-16: Separated Diaphragm cells from Muscle cells, and Aorta cells from Heart cells.</div><div><br></div><div>Update 2018-02-20: Aorta and Heart erroneously contained Diaphragm and Muscle data, and have now been corrected.</div><div><br></div><div>Update 2018-03-09: Renamed tissues for nomenclature standards: </div><div><ul><li> "Colon" --> "Large_Intestine"</li><li> "Muscle" --> "Limb_Muscle"</li><li> "Mammary" --> "Mammary_Gland"</li><li> "Brain_Microglia" --> "Brain_Myeloid"</li><li> "Brain_Non-microglia" --> "Brain_Non-Myeloid"</li></ul><div>Update 2018-03-22: Renamed subtissues:</div></div><div><br></div><div>- tissue: Heart, subtissue: ? --> tissue: Heart, subtissue: Unknown</div><div>- tissue: Skin, subtissue: NA --> tissue: Skin, subtissue: Telogen</div><div><br></div><div>Update 2018-03-23: Removed row numbers in first column of metadata_FACS.csv</div><div><br></div><div>Update 2018-03-27: Added tissue tSNEs and cluster ids</div><div><br></div><div><br></div><div>[1]</div><div><br></div></div>