QPX Genome Browser Feature Tracks
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
Genomic feature tracks (iebed, gff) from partial genome sequencing of QPX (Quahog Parasite Unknown). Data includes putative SNPs, RNA-seq data from cultures grown at two temperatures, and putative transcript locations based on sequence similarity searches. Feature tracks (and corresponding fasta file) developed to be viewed with Integrative Genomics Viewer (http://www.broadinstitute.org/igv/). Fileset includes sesssion file (.xml) to load all features.
All data are also available at http://eagle.fish.washington.edu/QPX_genome/
The Emerging Infectious Marine Diseases Consortium and a National Science Foundation Research Coordination Network Grant provided support for the graduate course Ecology of Marine Infectious Diseases at Friday Harbor Marine Laboratory, WA, where the majority of this work took place.