Fig 3.TIF (718.69 kB)
Principal components analysis on RAD-tag genotypes.
figure
posted on 2016-10-31, 17:36 authored by Meredith V. Everett, Linda K. Park, Ewann A. Berntson, Anna E. Elz, Curt E. Whitmire, Aimee A. Keller, M. Elizabeth ClarkeColors correspond to putative geographic population groupings in Fig 1 and Table 1. A. Includes all 23 individuals. The three outliers are the three individuals with the most missing loci. PC1 and PC2 explain 10.5% and 5.5% of the total variance respectively. B. PCA after removing the three individuals with excess missing markers. The separations along PC1 in both cases are driven by missing genotypes. After removal PC1 and PC2 explain 6.7% and 6.6% of the variance.
History
Usage metrics
Keywords
quality controlRADpopulation structure23 individualsSwiftia simplexGene FlowDeep-Sea Octocoral Swiftia simplexoctocoral Swiftia simplexF STUnited States Deep-sea coralscoordinates analysiswest coastF ST valuesUnited StatesLarge-Scale Genotyping-by-Sequencing Indicates High LevelsEastern Pacific watersWest Coastpopulation differentiationgenome-wide SNPsDNApopulation groupsspeciesoctocoral populationslife historyconnectivitySTRUCTURE analysishigh-throughput restriction-site
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC