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Protist Ribosomal Reference database (PR2) - SSU rRNA gene database - old version
Version 19 2018-02-21, 21:10
Version 18 2017-11-21, 19:10
Version 17 2017-10-07, 15:25
Version 16 2017-09-27, 11:48
Version 15 2017-09-11, 12:37
Version 14 2017-09-08, 17:01
Version 13 2017-09-06, 09:37
Version 12 2017-08-25, 11:48
Version 11 2017-01-20, 19:04
Version 10 2017-01-17, 12:46
Version 9 2017-01-17, 12:42
Version 8 2017-01-17, 12:06
Version 7 2017-01-17, 12:03
Version 6 2016-11-18, 17:28
Version 5 2016-11-18, 17:14
Version 4 2016-09-04, 09:46
Version 3 2016-09-04, 09:32
Version 2 2016-09-03, 12:41
Version 1 2016-09-02, 15:54
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posted on 2018-02-21, 21:10 authored by Daniel VaulotDaniel Vaulot, Laure GuillouLaure GuillouThe Protist Ribosomal Reference database (PR2) provides a unique access to eukaryotic small sub-unit (SSU) ribosomal RNA and DNA sequences, with curated taxonomy. The database mainly consists of nuclear-encoded protistan sequences. However, metazoans, land plants, macrosporic fungi and eukaryotic organelles (mitochondrion, plastid and others) are also included because they are useful for the analysis of high-troughput sequencing data sets. Introns and putative chimeric sequences have been also carefully checked. Taxonomic assignation of sequences consists of eight unique taxonomic fields.
The database is now available on Github for easier maintenance.
Home page : https://github.com/vaulot/pr2_database
Contact
Daniel VAULOT, Laure GUILLOU and Fabrice NOT
DIPO team, Plankton Group, UMR 7144 CNRS-UPMC
Station Biologique,
Place G. Tessier
29680 Roscoff FRANCE
email: vaulot@sb-roscoff.fr
Please cite
Daniel VAULOT, Laure GUILLOU and Fabrice NOT
DIPO team, Plankton Group, UMR 7144 CNRS-UPMC
Station Biologique,
Place G. Tessier
29680 Roscoff FRANCE
email: vaulot@sb-roscoff.fr
Please cite
Guillou, L., Bachar, D., Audic, S., Bass, D., Berney, C., Bittner, L., Boutte, C. et al. 2013. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. Nucleic Acids Res. 41:D597–604.
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- Phycology (incl. marine grasses)
- Marine and estuarine ecology (incl. marine ichthyology)
- Biogeography and phylogeography
- Plant cell and molecular biology
- Animal cell and molecular biology
- Bioinformatics and computational biology not elsewhere classified
- Microbial ecology
- Microbiology not elsewhere classified
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