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runPOCP.sh (0.18 kB)

POCP-matrix calculation for a number of genomes

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posted on 2017-11-19, 11:20 authored by Kateryna PantiukhKateryna Pantiukh, Denis GrouzdevDenis Grouzdev
This script takes FASTA files of protein sequences and calculates the POCP matrix (Qin et al. 2014; Journal of Bacteriology). This script is based on the script "POCP calculation for two genomes" of Anony Moose's. The main novelty is the possibility of comparing a large number of genomes pairs of comparison.

In directory shod be a script data_file_4.sh and fast file for each bacterial genome - NAMEf1.faa, NAMEf2.faa, NAMEf3.faa …

RUN: bash runPOCP.sh

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RFBR project no. ‎‎16-34-60071

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