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OTU and Taxonomy tables
dataset
posted on 2018-10-20, 09:27 authored by Sünje Johanna PampSünje Johanna Pamp, Anna Cäcilia MascheAnna Cäcilia MascheOTU and taxonomy tables
The provided operational taxonomic unit (OTU) table and associated taxonomy table were generated with the program Quantitative Insights Into Microbial Ecology (QIIME) as described in the methods sections of the journal article.
Reference
Ingham AC, Kielsen K, Cilieborg MS, Lund O, Holmes S, Aarestrup FM, Müller KG, and Pamp SJ. (2019) Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation. Microbiome 7:131 https://doi.org/10.1186/s40168-019-0745-z
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- Cancer diagnosis
- Chemotherapy
- Clinical microbiology
- Oncology and carcinogenesis not elsewhere classified
- Paediatrics not elsewhere classified
- Transplantation immunology
- Bacteriology
- Bioinformatics and computational biology not elsewhere classified
- Ecology not elsewhere classified
- Genomics
- Infectious agents
- Infectious diseases
- Microbial ecology
- Other biomedical and clinical sciences not elsewhere classified
- Microbiology not elsewhere classified
- Regenerative medicine (incl. stem cells)
Keywords
microbiotagutleukemiaHSCT16S rRNA gene profilinghost-microbe interactionimmunologystatisticsCancer DiagnosisChemotherapyClinical MicrobiologyOncology and Carcinogenesis not elsewhere classifiedPaediatricsTransplantation ImmunologyBacteriologyBioinformaticsCancerComputational BiologyEcology not elsewhere classifiedGenomicsInfectious AgentsInfectious DiseasesMicrobial EcologyMedicineMicrobiologyStem Cells
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