Rotavirus_A_Human_VP4_metadata.csv (26.61 kB)
Metadata of Rotavirus A VP4 protein (Human)
Complete list of accession numbers of Rotavirus A VP4 proteins (Human) used in the statistical analysis of Pessia and Corander (2017). Statistical analysis done with Kpax3 (https://github.com/albertopessia/Kpax3.jl).
Data can be downloaded from NCBI's Virus Variation Resource database (https://www.ncbi.nlm.nih.gov/genome/viruses/variation/) and aligned with MUSCLE (http://www.drive5.com/muscle/).
Reference:
Pessia, A. and Corander, J. (2017). "Bayesian cluster analysis of categorical data with supervised feature selection". Submitted.
Brister, J. R., Bao, Y., Zhdanov, S. A., Ostapchuck, Y., Chetvernin, V., Kiryutin, B., Zaslavsky, L., Kimelman, M., and Tatusova, T. A. (2013). "Virus Variation Resource - Recent Updates and Future Directions". Nucleic Acids Research, 42(D1): D660-D665.
Edgar, R. C. (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Research, 32(5): 1792-1797.
Data can be downloaded from NCBI's Virus Variation Resource database (https://www.ncbi.nlm.nih.gov/genome/viruses/variation/) and aligned with MUSCLE (http://www.drive5.com/muscle/).
Reference:
Pessia, A. and Corander, J. (2017). "Bayesian cluster analysis of categorical data with supervised feature selection". Submitted.
Brister, J. R., Bao, Y., Zhdanov, S. A., Ostapchuck, Y., Chetvernin, V., Kiryutin, B., Zaslavsky, L., Kimelman, M., and Tatusova, T. A. (2013). "Virus Variation Resource - Recent Updates and Future Directions". Nucleic Acids Research, 42(D1): D660-D665.
Edgar, R. C. (2004). "MUSCLE: multiple sequence alignment with high accuracy and high throughput". Nucleic Acids Research, 32(5): 1792-1797.
