Maximum-parsimony tree of haplogroup JT and list of samples used. from Reconciling evidence from ancient and contemporary genomes: a major source for the European Neolithic within Mediterranean Europe

The tree is annotated for synonymous (in red followed by the letter s), non-synonymous (in blue followed by ns), tRNA (coloured in orange), rRNA (in yellow) and control region (in black) nucleotides changes. All the nucleotide substitutions that are recurrent in the tree are underlined and reversions are marked with an exclamation mark (!).