MOESM1 of Structure, phylogeny, and expression of the frizzled-related gene family in the lophotrochozoan annelid Platynereis dumerilii
2015-12-04T05:00:00Z (GMT) by
Additional file 1: Table S1. Identifiers for Frizzed-related proteins of species used for Fig.Â 2 and TableÂ 1. Identifiers and accession numbers are shown for each Frizzled-related sequence that was used in various phylogenetic analyses in this study. For the analysis presented in Fig.Â 2 all Frizzled-related sequences were included from species (1) that represent each of the major animal branches, and (2) that in general retained an ancestral gene complement. Sequences with an asterisk were removed from the phylogenetic analysis (1) to restrict the total number of sequences shown, or (2) to remove sequences that were very divergent and had an adverse effect on the analysis e.g. long branch attraction. However, the annotations shown here are well supported by additional phylogenetic analyses (data not shown). Lophotrochozoan sequences are highlighted in red. The majority of protein sequences were obtained from NCBI, Bf_Fz5/8 and Ct_sFRP1/2/5 from the Joint Genome Institute, and Sk_Fz9/10 and Dr_sFRP2L were translated from mRNA sequences obtained from NCBI. Gene names for D. melanogaster and C. elegans are given in parentheses. Species abbreviations: Ac, Aplysia californica; Bf, Branchiostoma floridae; Ce, Caenorhabditis elegans; Cg, Crassostrea gigas; Ct, Capitella teleta; Dm, Drosophila melanogaster; Dp, Daphnia pulex; Dr, Danio rerio; Hr, Helobdella robusta; Hs, Homo sapiens; Lg, Lottia gigantea; Nv, Nematostella vectensis; Sk, Saccoglossus kowalevskii; Sp, Strongylocentrotus purpuratus; Tc, Tribolium castaneum; Xl, Xenopus laevis.
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