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K-mer distribution plot of Boothby et al. Illumina short reads (500bp insert)

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posted on 17.02.2016 by Kazuharu Arakawa
K-mer distribution (K=19) of Illumina short reads file for 500-insert reads (TG-500-SIPE_1_sequence.txt) from Boothby et al. generated with jellyfish with the estimate_genome_size.pl script. The presence of two peaks in this plot is suggestive of a high level of contamination.

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