HCP-MMP1.0 projected on fsaverage

2016-07-25T20:58:54Z (GMT) by Kathryn Mills
Hi All!<div><br></div><div>Following instructions gathered via twitter and the HCP message board, I've projected the new HCP-MMP1.0 parcellation onto fsaverage. I have attached the annotation files here and detailed my process below:</div><div><br></div><div>1. Download the correct data from BALSA:</div><div>https://balsa.wustl.edu/WN56</div><div><br></div><div>2. Download the correct spheres from the HCP github page:</div><div>this is detailed here: https://www.mail-archive.com/hcp-users%40humanconnectome.org/msg02890.html</div><div><br></div><div>3. Using workbench, convert parcellation dabel.nii file label.gii file:</div><div><div><br></div><div>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_LEFT Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.label.gii</div></div><div><br></div><div>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_RIGHT Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Colors.32k_fs_LR.label.gii</div><div><br></div><div>4. Using workbench, convert label.gii file to fsaverage space:</div><div><div><br></div><div>wb_command -label-resample Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.label.gii L.sphere.32k_fs_LR.surf.gii fs_L-to-fs_LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii BARYCENTRIC left.fsaverage164.label.gii</div><div><br></div><div>wb_command -label-resample Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Colors.32k_fs_LR.label.gii R.sphere.32k_fs_LR.surf.gii fs_R-to-fs_LR_fsaverage.R_LR.spherical_std.164k_fs_R.surf.gii BARYCENTRIC right.fsaverage164.label.gii</div><div><br></div></div><div><br></div><div>5. Using freesurfer, convert files from gii to annot:</div><div><div><br></div><div>mris_convert --annot left.fsaverage164.label.gii fs_L-to-fs_LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii lh.HCP-MMP1.annot</div></div><div><br></div><div>mris_convert --annot right.fsaverage164.label.gii fs_R-to-fs_LR_fsaverage.R_LR.spherical_std.164k_fs_R.surf.gii rh.HCP-MMP1.annot</div><div><br></div><div>6. Rejoice and share!</div><div><br></div>