Gene orthology for the brachiopod segmentation project

2015-10-24T15:28:17Z (GMT) by Bruno C. Vellutini Andreas Hejnol

Orthology was assigned by aligning amino acid sequences of brachiopods against annotated genes using MAFFT 7.215, retaining only informative portions of the alignment with GBlocks 0.91b with relaxed parameters and running a Maximum Likelihood phylogenetic analysis with RAxML 8.1.17 using automatic model recognition and rapid bootstrap.