pcbi.1006117.g004.tif (709.24 kB)
Error and calibration of BadTrIP inferring infection time from simulated data.
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posted on 2018-04-18, 17:47 authored by Nicola De Maio, Colin J. Worby, Daniel J. Wilson, Nicole StoesserA) Error (root mean square error) of the inferred median times of infection with BadTrIP. The time unit is days, with a simulated transmission rate of 0.1 per day, and a recovery rate of 0.07 per day (mean duration of infection ≈ 14.3 days). B) Calibration (the percentage with which the true time of infection is within the inferred 95% credible interval) for the time of infection with BadTrIP. Simulation scenarios are as in Fig 3.
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BAyesian epiDemiological TRansmission Inferencewithin-host pathogen population dynamicssequencing error2014 Ebola outbreakBadTrIPwithin-host genomic variantswithin-host pathogen genomic variantstransmission eventsphylogenetic software BEAST 2.pathogen sequencing datamodel disease transmissiongenomic variants Pathogen genome sequencing
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