DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene

<p>Mordret, S., Piredda, R., Vaulot, D., Montresor, M., Kooistra, H. C. F. & Sarno, D. (under revision 2018). DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene. <i>Molecular Ecology Resources.</i><br></p><p><b><br></b></p><p><b>Supplementary Material</b><b> 1 </b></p><p> </p><p>List of 18S sequences included in DinoREF including annotations extracted from GenBank and literature sources (see “read-me” for details on metadata).</p><p><b>Supplementary Material 2</b></p><p>Fasta file (.fast) of sequences used to build DinoREF including the GenBank Accession number of each sequence.</p><p><b>Supplementary Material 3</b></p><p>DinoREF taxonomy file 1 (.taxonomy) with the taxonomy provided by GenBank for each sequence included in the database. </p><p><b>Supplementary Material 4</b></p><p>DinoREF taxonomy file 2 (.taxonomy) with the 8-level taxonomy for each sequence included in the database. </p><p><b>Supplementary Material 5</b></p><p>DinoREF taxonomy file 3 (.taxonomy) with the classification by Superclades for each sequence included in the database.</p><p><b>Supplementary Material 6</b></p><p>List of V4 unique sequences. When multiple 18S sequences share the same V4 region, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.</p><p><b>Supplementary Material 7</b></p><p>List of OTUs_98%. When multiple V4 sequences cluster in the same OTU at 98%, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.</p><p><b>Supplementary Material 8</b></p><p> Fasta file (.fasta) of sequences of early branching dinoflagellates.<br></p>