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Circos visualization of SNP-gene pairs identified as trans-eQTL with expression measured in ER- tumor samples.

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posted on 2017-02-02, 18:35 authored by Alejandro Quiroz-Zárate, Benjamin J. Harshfield, Rong Hu, Nick Knoblauch, Andrew H. Beck, Susan E. Hankinson, Vincent Carey, Rulla M. Tamimi, David J. Hunter, John Quackenbush, Aditi Hazra

Owing to label crowding, some SNP are not distinguished. Links lacking labels correspond to unannotated HTA 1.0 transcript clusters. Details on all significant associations are provided in the bceBrowse utility in the bceQTL package for Bioconductor.

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    FFPESNPGWASexpression variationFDRgenome-wide association studiespostmenopausal breast cancer casesExpression Quantitative Trait lociAffymetrix Human Transcriptome Arraytumor receptor status6 q 25tissue samples21 Oncotype DX recurrence signature genesQTL6 q 14TCGA fresh-frozen sample setsgene setsNHSbreast tumor tissue

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