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CUF101-selmap
Version 2 2017-11-18, 11:28
Version 1 2017-08-09, 20:00
dataset
posted on 2017-11-18, 11:28 authored by Gitanshu MunjalGitanshu MunjalData files for reproducing selection mapping results:
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"SNPs_counts-R.txt"
- Raw count file (84978 x 576)
- 84978 markers
- 288 individuals, 2 alleles per individual
Format:
marker1 ind.1a1count ind.1a2count.....ind.na1count ind.na2count
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- Cluster sequences in fasta format
- MockReference sequence in fasta format
- both produced using modified GBS-SNP-CROP
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"SNPsCADL.bwa.sam"
"SNPsMt.bwa.sam"
- SAM format (without header) alignment information from aligning clusters to Mt v4.0 and CADL----------------------------
"SNP_clustermap.desc.txt"
- Cluster information (i.e. which cluster a marker originates from and coordinates) for every marker
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"pheno-1-R.txt"
phenotype (height) data from field evaluation
