12864_2017_3943_MOESM4_ESM.xlsx (31.75 MB)
Additional file 4: Table S4. of Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds
dataset
posted on 2017-07-27, 05:00 authored by Robert Schaefer, Mikkel Schubert, Ernest Bailey, Danika Bannasch, Eric Barrey, Gila Bar-Gal, Gottfried Brem, Samantha Brooks, Ottmar Distl, Ruedi Fries, Carrie Finno, Vinzenz Gerber, Bianca Haase, Vidhya Jagannathan, Ted Kalbfleisch, Tosso Leeb, Gabriella Lindgren, Maria Lopes, Núria Mach, Artur da Câmara Machado, James MacLeod, Annette McCoy, Julia Metzger, Cecilia Penedo, Sagi Polani, Stefan Rieder, Imke Tammen, Jens Tetens, Georg Thaller, Andrea Verini-Supplizi, Claire Wade, Barbara Wallner, Ludovic Orlando, James Mickelson, Molly McCueMNEc670k SNP information. Contains information on MNEc670k SNPs. Includes Affymetrix probe ID, genetic coordinates, MNEc Identifier, tissue origin indicating high quality genotyping in either hair root or blood, Affymetrix assigned genotyping cluster resolution, and inclusion criteria: Intra – SNP tags intra-breed haplotype, Inter – SNP tags inter-breed haplotype, MHC – SNP within Equine Major Histocompatibility Complex region, Diverse – SNP tags haplotype in 3 or more of diverse breeds that need many tagging SNPs (Quarter Horse, Pony, Morgan, Standardbred; See Additional file 4: Table S4), Density – SNP included to target at least 8 SNPs per 50 kb genomic window (targeting uniform genomic coverage). (XLSX 32510 kb)
