Additional file 2 of LinkImputeR: user-guided genotype calling and imputation for non-model organisms

Number of SNPs, number of samples and correlation for every good case for the apple dataset. A good case is defined as one where there is no other case with at least the same number of SNPs and samples and a higher correlation. Points are marked by the read depth and missingness threshold used, e.g. 8/0.2 means a read depth of 8 and a missingness threshold of 0.2. (TIF 371 kb)