12859_2017_1552_MOESM1_ESM.r (15.73 kB)
Additional file 1: of Statistical method to compare massive parallel sequencing pipelines
dataset
posted on 2017-03-01, 05:00 authored by MH. Elsensohn, N. Leblay, S. Dimassi, A. Campan-Fournier, A. Labalme, F. Roucher-Boulez, D. Sanlaville, G. Lesca, C. Bardel, P. RoyR code example. This R code allows reproducing the findings presented in the article regarding comparison results between two pipelines (BWA-GATK and TMAP-NextGen) without taking into account a Gold Standard (here, Sanger sequencing). When Gold Standard results are available, some data preparation steps should be added before modelling. All the details about these steps are given in the R file. (R 16Â KB) (R 15 kb)
