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A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
Version 3 2020-06-15, 07:59
Version 2 2020-06-08, 12:38
Version 1 2019-11-22, 11:46
dataset
posted on 2019-11-22, 11:46 authored by Graceline Tina KirubakaranGraceline Tina Kirubakaran, Matthew Peter KentFile S1: wtdbg2 parameters used to generate the two initial genome assemblies.
File S2: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC).
File S3: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases.
File S4: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes.
File S5: This contains the list of genes and positions in LGs 1, 2, 7 and 12.
File S6: The putative 258bp centromere repeat sequence.
gadMor_celtic_repeat_Library.fa.txt - Repeat library
gadMor_Celtic.fa.txt -Genome assembly
