contig_paper_Data160218.zip

Data used in 'Facilitated sequence assembly using densely labeled optical<br>DNA barcodes: a combinatorial auction approach' <br><br>DNA kymographs from plasmids obtained from nano-channel based competitive binding assays. <br><br>Folder Molecules stores kymographs (in subfolder Raw Kymographs) from 4 different plasmids wtih corresponding sequence (in txt and fasta filenames).<br><br>The four plasmids we consider are pEC005A (PLOS005-pEC005A_140429, 13 kymographs), pEC005B (PLOS005-pEC005B_140429, 14 kymographs), p4 2 1.1 (DA32095-P4_2_1.1_170330, 35 kymographs) and pUUH (DA15001-pUUH_150603, 14 kymographs). <br><br>Folder Consensus stores time-averaged and clustered and aligned to theory consensus barcodes.<br><br>Folder Contigs stores the contigs for pUUH and it's chromosome (DA1500 all both 13.fasta and 28.1.fasta 28.2.fasta)<br><br>Folder Lambda stores kymographs for the lambda molecules for each experiment<br><br>Folder Chromosomes stores chromosomal sequences for pUUH (pUUH_chromosomal.fasta) and p4 2 1.1 (4_2_1.fsa, contains one long contig and a few shorter ones, we use only the long one in the analysis)<br><br>