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List of HGT and HGT-free genes derived from the HGTree database

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modified on 2017-10-30, 17:17
The two datasets reported here are derived from the HGTree database (http://hgtree.snu.ac.kr), a database that stores HGT events detected on orthologous genes in prokaryotic genomes (see Jeong et al. Nucleic Acids Research 2016, 44:D610-19). The datasets reported here calculate the number of HGT events detected on each gene tree and normalize it by the total number of taxa on that gene tree to report an HGT-index (ranging from 0 to 1, with higher-values indicating higher HGT participation). The two datasets report protein family and functional annotation informations for both HGT-genes (Dataset S1) and HGT-free genes (Dataset S2).

Funding

AN is supported by the Higher Education Commission, Start-up Research Grant Program (Project no. 21-519/SRGP/R&D/HEC/2014).