Macro2 for stacks_Results.ijm (2.05 kB)
Macro 2 for image stacks
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software
modified on 2017-05-16, 18:26 The macro automates spheroid size analysis in the open-source image analysis platform ImageJ (Fiji distribution). It works with image sequences (stacks) of multiple images in one file. It can also be used on separate images when the latter are imported as an image sequence in ImageJ. It is quicker than macro1 and allows fine user control of thresholding.
Funding
Delyan Ivanov was supported by an EPSRC Doctoral Prize award hosted by the University of Nottingham (DP2014/DI)
Categories
- Animal physiology - cell
- Bioinformatics and computational biology not elsewhere classified
- Agricultural biotechnology not elsewhere classified
- Bioinformatic methods development
- Other biological sciences not elsewhere classified
- Medical biotechnology not elsewhere classified
- Oncology and carcinogenesis not elsewhere classified
- Biochemistry and cell biology not elsewhere classified
- Cell development, proliferation and death
- Cellular interactions (incl. adhesion, matrix, cell wall)
- Regenerative medicine (incl. stem cells)
- Cancer cell biology
- Chemotherapy
Keywords
spheroid sizeimageJFiji3D cell culturepreclinical screeningoverlayultra low attachmentAnimal Physiology - CellBioinformaticsBiological EngineeringBiological TechniquesBiotechnologyCancerCell BiologyCell Development, Proliferation and DeathCellular Interactions (incl. Adhesion, Matrix, Cell Wall)Stem CellsCancer Cell BiologyChemotherapy
