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Concomitant Emergence of the AntiSense Protein Gene of HIV-1 and of the Pandemic

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modified on 31.03.2017, 13:53
Elodie CASSAN, Anne-Muriel ARIGON CHIFOLLEAU, Jean-Michel MESNARD, Antoine GROSS, and Olivier GASCUEL 

Corresponding authors: olivier.gascuel@pasteur.fr, antoine.gross@cpbs.cnrs.fr

Four packages are available:
- The Alignments.tar.gz package contains the nucleic env gene alignment and the nucleic frame -2 alignment.
- The SeqAnalyses.tar.gz package contains the python script seq_analyses.py with input and output files. This script generates a CSV file with information for each sequence. 
- The StopStatistics.tar.gz package contains the bash script StopStatistics.sh with input files and software. This script computes statistics and p-values on potential/existing stops. 
-The Simulation.tar.gr package contains the bash script Simulation.sh with input files and software. This script computes sequence simulations based on a codon model by using PhyML, codonPhyML and Alf softwares.


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