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Isolation and genome sequencing of Zika virus recovered from field-captured culicids from Vitória, Espírito Santo, Brazil
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dataset
modified on 2018-10-24, 19:40 Mapping output from Bowtie2 with reads generated from Culex quinquefasciatus and Aedes aegypti positive sample.
command line used
bowtie2 -x $1 -1 $R1 -2 $R2 --al-conc aligned_reads.fastq > $PREFIXOUT.bam
samtools sort $PREFIXOUT.bam -o $PREFIXOUT.sorted.bam
samtools index $PREFIXOUT.sorted.bam
