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Supplementary_Data_for_Albert_Bloom_Kruglyak_2017

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modified on 20.05.2018, 21:10
These files contain supplementary data for the manuscript "Genetics of trans-regulatory variation in gene expression" by Frank Albert, Joshua Bloom, Jake Siegel, Laura Day, and Leonid Kruglyak.

Supplementary Data 01 contains expression values used in the analyses.

Supplementary Data 02 contains covariates used in the analyses.

Supplementary Data 03 contains genotypes used in the analyses.

Supplementary Data 04 lists all identified eQTL.

Supplementary Data 05 reports heritabilities for each gene.

Supplementary Data 06 contains various gene features used in the analyses.

Supplementary Data 07 contains data for ASE analyses.

Supplementary Data 08 lists the trans-eQTL hotspots.

Supplementary Data 09 contains estimated effects of each hotspot on each gene.

Supplementary Data 10 is a multi-page pdf file with one page per hotspot. It shows the hotspot regions.

Supplementary Data 11 is a multi-page pdf file with one page per hotspot. It shows gene expression networks affected by the hotspots.

Supplementary Data 12 contains results from a GO enrichment analysis for genes affected by each hotspot.

Supplementary Data 13 contains results from a transcription factor binding site enrichment analysis for genes affected by each hotspot.

Supplementary Data 14 contains results from an enrichment analyses of genes located in hotspot regions.

Supplementary Data 15 contains data and results for comparisons between eQTL and pQTL.

Supplementary Data 16 lists all detected epistatic interactions.