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readme.txt (3.07 kB)
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TWAS.MeasuredGeneExpression.R (0.73 kB)
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sample.information.txt (92.08 kB)
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TWAS.MeasuredGeneExpression.Seedling.gene.geno.txt.gz (25.47 MB)
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TWAS.MeasuredGeneExpression.Seedling.gene.map.txt (1.62 MB)
DATASET
PodColor.ForAssociation.csv (7.13 kB)
DATASET
TWAS.MeasuredGeneExpression.PodColor.L2.CMLM.Results.csv (5.5 MB)
ARCHIVE
FUSION.LDREF.tar.gz (75.41 MB)
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FUSION.WEIGHTS.SeedlingShoot.pos (1.74 MB)
ARCHIVE
FUSION.WEIGHTS.tar.gz (334.18 MB)
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FUSION.assoc_test.R (16.19 kB)
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FUSION.PodColor.Output.zip (996.59 kB)
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FUSION.PodColor.L2.GWAS.gemma.txt.gz (65.45 MB)
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SMR.eqtl.tar.gz (156.61 MB)
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SMR.LDREF.tar.gz (95.81 MB)
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SMR.PodColor.L2.assoc.gemma.txt.gz (61.98 MB)
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SMR.output.PodColor.L2.gz (1.03 MB)
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Soybean.SeedlingShoot.GmV2.Genes.readscount.csv.gz (37.6 MB)
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Soybean.SeedlingShoot.GmV2.Exon.readscount.csv.gz (213.48 MB)
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The soybean expression data, eQTL data and TWAS examples
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dataset
modified on 2023-04-12, 09:33 We conducted RNA-Seq on 622 soybean accessions including wild 70, landrace 304 and improved lines 248. The raw sequenced reads have been deposited into the Genome Sequence Archive (GSA) database in BIG Data Center (https://bigd.big.ac.cn/gsa/index.jsp) as Accession Number CRA009979. Here are the reads counts matrix for gene expression and coding exon expression, expression weights required by FUSION, summary level data required by SMR, and imputed genotyping data. Soybean pod color TWAS with three TWAS approaches were provided. Please see more detail in the readme.txt
